Welcome to ICSD’s documentation!

Quick use

Clone the gitlab repository:

git clone https://github.com/Peruz/icsd

From the same icsd3d directory you can import the module from source using python.

Contribute and support

• Source Code: https://github.com/Peruz/icsd
• Issue Tracker: https://github.com/Peruz/icsd/issues

Citing ICSD3d

If you use the ICSD3d code for you work, please cite this paper as:

Peruzzo, L., Chou, C., Wu, Y. et al. Imaging of plant current pathways for non-invasive root Phenotyping using a newly developed electrical current source density approach. Plant Soil (2020). https://doi.org/10.1007/s11104-020-04529-w

ICSD

• Introduction
• Getting Started
• Which Python?
• Dependencies
• Optionnal Third party packages

Documentation

• The Mise-à-la-masse method
  • Background
  • The MALM forward operator
  • Green functions simulation
  • Problem linearisation
  • Problem regularisation
  • Model appraisal
  • Other approaches

Gallery of examples

Gallery of examples

• Gallery of examples

API documentation

API

• API reference: The icsd3d package
  • icsd3d.inversion: inversion scheme
    • Prior model
    • Smoothing
    • Solver
  • icsd3d.plotters: plotters for results visualisation
  • icsd3d.gridder: Grid data
  • icsd3d.importers: wrappers to facilitate import of common ERT data

Indices and tables

• Index
• Module Index
• Search Page